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nxnl2 nucleoredoxin like 2 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108873976, updated on 10-Apr-2024

Summary

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Gene symbol
nxnl2
Gene description
nucleoredoxin like 2
See related
EnsemblRapid:ENSLCAG00010003982
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG9
Exon count:
2
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG9 NC_066841.1 (14505042..14507611)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366727.1 (1782886..1785479, complement)

Linkage Group LG9 - NC_066841.1Genomic Context describing neighboring genes Neighboring gene betacellulin, epidermal growth factor family member Neighboring gene guanine nucleotide binding protein (G protein), gamma 10 Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 1a Neighboring gene phospholipid phosphatase 1a Neighboring gene exosome RNA helicase MTR4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photoreceptor cell maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoredoxin-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066841.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    14505042..14507611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018662288.2 → XP_018517804.1  nucleoredoxin-like protein 2

    UniProtKB/TrEMBL
    A0A4W6CC98
    Related
    ENSLCAP00010008208.1, ENSLCAT00010008401.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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