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wdpcp WD repeat containing planar cell polarity effector [ Lates calcarifer (barramundi perch) ]

Gene ID: 108873207, updated on 10-Apr-2024

Summary

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Gene symbol
wdpcp
Gene description
WD repeat containing planar cell polarity effector
See related
EnsemblRapid:ENSLCAG00010013399
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG16_LG22
Exon count:
20
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG16_LG22 NC_066848.1 (16351964..16447603)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363848.1 (298630..393425, complement)

Linkage Group LG16_LG22 - NC_066848.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family H, member 1 Neighboring gene pellino E3 ubiquitin protein ligase 1b Neighboring gene UDP-glucose pyrophosphorylase 2b Neighboring gene malate dehydrogenase 1Ab, NAD (soluble) Neighboring gene orthodenticle homeobox 1 Neighboring gene EH domain binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axonemal basal plate IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing and planar cell polarity effector protein fritz homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066848.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    16351964..16447603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018661337.2 → XP_018516853.1  WD repeat-containing and planar cell polarity effector protein fritz homolog isoform X1

    UniProtKB/TrEMBL
    A0A4W6DS09, A0A4W6DU82
    Related
    ENSLCAP00010028560.1, ENSLCAT00010029174.2

  2. XM_018661345.2 → XP_018516861.1  WD repeat-containing and planar cell polarity effector protein fritz homolog isoform X2

    UniProtKB/TrEMBL
    A0A4W6DS09
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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