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trmt112 tRNA methyltransferase activator subunit 11-2 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108872575, updated on 10-Apr-2024

Summary

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Gene symbol
trmt112
Gene description
tRNA methyltransferase activator subunit 11-2
See related
EnsemblRapid:ENSLCAG00010032181
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
4
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG8 NC_066840.1 (14829263..14832497)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366499.1 (1537702..1540933, complement)

Linkage Group LG8 - NC_066840.1Genomic Context describing neighboring genes Neighboring gene nuclear RNA export factor 1a Neighboring gene autophagy related 2A Neighboring gene transforming growth factor, beta 5 Neighboring gene potassium channel, subfamily K, member 4a Neighboring gene centromere protein F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-glutamine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA (guanine-N7)-methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multifunctional methyltransferase subunit TRM112-like protein
Names
tRNA methyltransferase 11-2 homolog
tRNA methyltransferase subunit 11-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066840.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    14829263..14832497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018660347.2 → XP_018515863.1  multifunctional methyltransferase subunit TRM112-like protein

    UniProtKB/TrEMBL
    A0A4W6EY04
    Related
    ENSLCAP00010067038.1, ENSLCAT00010077851.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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