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PDLIM4 PDZ and LIM domain 4 [ Rhinopithecus bieti (black snub-nosed monkey) ]

Gene ID: 108529596, updated on 14-Mar-2024

Summary

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Gene symbol
PDLIM4
Gene description
PDZ and LIM domain 4
See related
Ensembl:ENSRBIG00000031610
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus bieti
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM169854v1 (GCF_001698545.1) Unplaced Scaffold NW_016805277.1 (3475323..3490057, complement)

NW_016805277.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108529594 Neighboring gene solute carrier family 22 member 4 Neighboring gene uncharacterized protein C7orf73-like Neighboring gene prolyl 4-hydroxylase subunit alpha 2 Neighboring gene PBX/knotted 1 homeobox 1 Neighboring gene uncharacterized LOC108529600

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016805277.1 Unplaced Scaffold Reference ASM169854v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus bieti Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM169854v1 Primary Assembly

Genomic

  1. NW_016805277.1 Reference ASM169854v1 Primary Assembly

    Range
    3475323..3490057 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017872036.1 → XP_017727525.1  PDZ and LIM domain protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A2K6KUQ5
    Related
    ENSRBIP00000015002.1, ENSRBIT00000038842.1
    Conserved Domains (3) summary
    cd09451
    Location:255 → 307
    LIM_RIL; The LIM domain of RIL
    cd00992
    Location:2 → 80
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:148 → 220
    DUF4749; Domain of unknown function (DUF4749)

  2. XM_017872034.1 → XP_017727523.1  PDZ and LIM domain protein 4 isoform X2

    Conserved Domains (3) summary
    PHA03247
    Location:79 → 311
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:2 → 80
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:148 → 225
    DUF4749; Domain of unknown function (DUF4749)

  3. XM_017872033.1 → XP_017727522.1  PDZ and LIM domain protein 4 isoform X1

  4. XM_017872035.1 → XP_017727524.1  PDZ and LIM domain protein 4 isoform X3

Nucleotide Protein
Heading Accession and Version

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