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    coxS CO-dehydrogenase small chain CoxS [ Oligotropha carboxidovorans OM5 ]

    Gene ID: 10852781, updated on 11-May-2013
    Gene symbol
    coxS
    Gene description
    CO-dehydrogenase small chain CoxS
    Locus tag
    OCA5_pHCG300300
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oligotropha carboxidovorans OM5 (strain: OM5, culture-collection: DSMZ:DSM 1227, other: type strain of Oligotropha carboxidovorans)
    Lineage
    Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha
    Location :
    plasmid: pHCG3
    Sequence :
    NC_015689.1 (29767..30267)

    NC_015689.1Genomic Context describing neighboring genes Neighboring gene transcriptional regulator with MHYT and LytTR domains Neighboring gene carbon monoxide dehydrogenase medium chain CoxM Neighboring gene CO-dehydrogenase large chain CoxL Neighboring gene CoxD Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5. Volland S, et al. J Bacteriol, 2011 Sep. PMID 21742883.
    2. Complete nucleotide sequence of the circular megaplasmid pHCG3 of Oligotropha carboxidovorans: function in the chemolithoautotrophic utilization of CO, H(2) and CO(2). Fuhrmann S, et al. Gene, 2003 Dec 11. PMID 14644498.
    3. Sequence analysis, characterization and CO-specific transcription of the cox gene cluster on the megaplasmid pHCG3 of Oligotropha carboxidovorans. Santiago B, et al. Gene, 1999 Aug 5. PMID 10433972.
    4. Purification and molecular characterization of the H2 uptake membrane-bound NiFe-hydrogenase from the carboxidotrophic bacterium Oligotropha carboxidovorans. Santiago B, et al. J Bacteriol, 1997 Oct. PMID 9324252.
    5. Molecular characterization of the gene cluster coxMSL encoding the molybdenum-containing carbon monoxide dehydrogenase of Oligotropha carboxidovorans. Schübel U, et al. J Bacteriol, 1995 Apr. PMID 7721710.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    CO-dehydrogenase small chain CoxS
    YP_004638432.1
    • pHCG3_035

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_015689.1

      Range
      29767..30267
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_004638432.1 CO-dehydrogenase small chain CoxS [Oligotropha carboxidovorans OM5]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P19921
      Conserved Domains (2) summary
      COG2080
      Location:3 – 154
      Blast Score: 507
      CoxS; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
      pfam01799
      Location:76 – 150
      Blast Score: 299
      Fer2_2; [2Fe-2S] binding domain
    Nucleotide Protein
    Heading Accession and Version
    genomic CP002827.1 AEI08105.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    P19921.2 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • 3D structures
        3D structure of a gene
      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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