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APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A [ Rhinopithecus bieti (black snub-nosed monkey) ]

Gene ID: 108521436, updated on 14-Mar-2024

Summary

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Gene symbol
APOBEC3A
Gene description
apolipoprotein B mRNA editing enzyme catalytic subunit 3A
See related
Ensembl:ENSRBIG00000042829
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus bieti
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM169854v1 (GCF_001698545.1) Unplaced Scaffold NW_016823127.1 (121828..133462, complement)

NW_016823127.1Genomic Context describing neighboring genes Neighboring gene DNA dC->dU-editing enzyme APOBEC-3F-like Neighboring gene DNA dC->dU-editing enzyme APOBEC-3B-like Neighboring gene chromobox 6 Neighboring gene neuronal pentraxin receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016823127.1 Unplaced Scaffold Reference ASM169854v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deoxycytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA cytosine deamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA dC->dU-editing enzyme APOBEC-3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus bieti Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM169854v1 Primary Assembly

Genomic

  1. NW_016823127.1 Reference ASM169854v1 Primary Assembly

    Range
    121828..133462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017861267.1 → XP_017716756.1  DNA dC->dU-editing enzyme APOBEC-3A isoform X2

    UniProtKB/TrEMBL
    A0A2K6MSA9

  2. XM_017861263.1 → XP_017716752.1  DNA dC->dU-editing enzyme APOBEC-3A isoform X1

    UniProtKB/TrEMBL
    A0A2K6MSA9
    Related
    ENSRBIP00000038655.1, ENSRBIT00000062674.1
    Conserved Domains (1) summary
    pfam18782
    Location:1 → 182
    NAD2; Novel AID APOBEC clade 2

  3. XM_017861264.1 → XP_017716753.1  DNA dC->dU-editing enzyme APOBEC-3A isoform X1

    UniProtKB/TrEMBL
    A0A2K6MSA9
    Conserved Domains (1) summary
    pfam18782
    Location:1 → 182
    NAD2; Novel AID APOBEC clade 2

  4. XM_017861266.1 → XP_017716755.1  DNA dC->dU-editing enzyme APOBEC-3A isoform X1

    UniProtKB/TrEMBL
    A0A2K6MSA9
    Related
    ENSRBIP00000038651.1, ENSRBIT00000062670.1
    Conserved Domains (1) summary
    pfam18782
    Location:1 → 182
    NAD2; Novel AID APOBEC clade 2

  5. XM_017861265.1 → XP_017716754.1  DNA dC->dU-editing enzyme APOBEC-3A isoform X1

    UniProtKB/TrEMBL
    A0A2K6MSA9
    Conserved Domains (1) summary
    pfam18782
    Location:1 → 182
    NAD2; Novel AID APOBEC clade 2
Nucleotide Protein
Heading Accession and Version

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