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MSH2 mutS homolog 2 [ Lepidothrix coronata (blue-crowned manakin) ]

Gene ID: 108508769, updated on 14-Mar-2024

Summary

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Gene symbol
MSH2
Gene description
mutS homolog 2
See related
Ensembl:ENSLCOG00000014435
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepidothrix coronata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Lepidothrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Lepidothrix_coronata-1.0 (GCF_001604755.1) Unplaced Scaffold NW_016690493.1 (501256..524510, complement)

NW_016690493.1Genomic Context describing neighboring genes Neighboring gene F-box protein 11 Neighboring gene mutS homolog 6 Neighboring gene uncharacterized LOC108508778 Neighboring gene potassium two pore domain channel subfamily K member 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016690493.1 Unplaced Scaffold Reference Lepidothrix_coronata-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in somatic recombination of immunoglobulin genes involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MutSalpha complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA mismatch repair protein Msh2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepidothrix coronata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lepidothrix_coronata-1.0

Genomic

  1. NW_016690493.1 Reference Lepidothrix_coronata-1.0

    Range
    501256..524510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017837837.1 → XP_017693326.1  DNA mismatch repair protein Msh2

    UniProtKB/TrEMBL
    A0A6J0J556
    Related
    ENSLCOP00000020389.1, ENSLCOT00000021554.1
Nucleotide Protein
Heading Accession and Version

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