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PRDM1 PR/SET domain 1 [ Lepidothrix coronata (blue-crowned manakin) ]

Gene ID: 108504931, updated on 14-Mar-2024

Summary

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Gene symbol
PRDM1
Gene description
PR/SET domain 1
See related
Ensembl:ENSLCOG00000016122
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepidothrix coronata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Lepidothrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Lepidothrix_coronata-1.0 (GCF_001604755.1) Unplaced Scaffold NW_016690185.1 (53451..109779)

NW_016690185.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108504962 Neighboring gene autophagy related 5 Neighboring gene crystallin beta-gamma domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016690185.1 Unplaced Scaffold Reference Lepidothrix_coronata-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepidothrix coronata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lepidothrix_coronata-1.0

Genomic

  1. NW_016690185.1 Reference Lepidothrix_coronata-1.0

    Range
    53451..109779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017830486.1 → XP_017685975.1  PR domain zinc finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0IGU4

  2. XM_017830509.1 → XP_017685998.1  PR domain zinc finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0IGU4
    Related
    ENSLCOP00000022950.1, ENSLCOT00000024250.1

  3. XM_017830480.1 → XP_017685969.1  PR domain zinc finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0IGU4

  4. XM_017830472.1 → XP_017685961.1  PR domain zinc finger protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0IJ25

  5. XM_017830496.1 → XP_017685985.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6J0IGV4
    Conserved Domains (5) summary
    COG5048
    Location:323 → 592
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:481 → 501
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:2 → 112
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:521 → 546
    zf-H2C2_2; Zinc-finger double domain
    cl41771
    Location:234 → 325
    SP6-9_N; N-terminal domains of transcription factor Specificity Proteins (SP) 6-9, and similar proteins

  6. XM_017830504.1 → XP_017685993.1  PR domain zinc finger protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6J0IH87
    Related
    ENSLCOP00000022951.1, ENSLCOT00000024251.1
    Conserved Domains (4) summary
    COG5048
    Location:261 → 530
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:419 → 439
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl40432
    Location:1 → 50
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
    pfam13465
    Location:459 → 484
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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