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VTI1B vesicle transport through interaction with t-SNAREs 1B [ Lepidothrix coronata (blue-crowned manakin) ]

Gene ID: 108504573, updated on 14-Mar-2024

Summary

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Gene symbol
VTI1B
Gene description
vesicle transport through interaction with t-SNAREs 1B
See related
Ensembl:ENSLCOG00000016372
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepidothrix coronata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Lepidothrix
Orthologs
human mouse all
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Genomic context

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See VTI1B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Lepidothrix_coronata-1.0 (GCF_001604755.1) Unplaced Scaffold NW_016690348.1 (452062..467058, complement)

NW_016690348.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology, MyTH4 and FERM domain containing H1 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class H Neighboring gene arginase 2 Neighboring gene retinol dehydrogenase 12-like Neighboring gene zinc finger FYVE-type containing 26

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016690348.1 Unplaced Scaffold Reference Lepidothrix_coronata-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion with Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle transport through interaction with t-SNAREs homolog 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepidothrix coronata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lepidothrix_coronata-1.0

Genomic

  1. NW_016690348.1 Reference Lepidothrix_coronata-1.0

    Range
    452062..467058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017829747.1 → XP_017685236.1  vesicle transport through interaction with t-SNAREs homolog 1B isoform X1

    UniProtKB/TrEMBL
    A0A6J0IGU3
    Related
    ENSLCOP00000023335.1, ENSLCOT00000024651.1

  2. XM_017829748.1 → XP_017685237.1  vesicle transport through interaction with t-SNAREs homolog 1B isoform X2

    UniProtKB/TrEMBL
    A0A6J0IF34

RNA

  1. XR_001877173.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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