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prdm5 PR domain containing 5 [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108435552, updated on 14-Mar-2024

Summary

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Gene symbol
prdm5
Gene description
PR domain containing 5
See related
EnsemblRapid:ENSPNAG00000026181
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 9 NC_051219.1 (12326601..12402735, complement)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243942.1 (306410..379922, complement)

Chromosome 9 - NC_051219.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene U2 spliceosomal RNA Neighboring gene neuron-derived neurotrophic factor Neighboring gene tripartite motif-containing protein 29-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 5
Names
PR/SET domain 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051219.1 Reference fPygNat1.pri

    Range
    12326601..12402735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037541069.1 → XP_037396966.1  PR domain zinc finger protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A3B4D0A3
    Conserved Domains (3) summary
    COG5048
    Location:221 → 581
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:450 → 470
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl40432
    Location:1 → 85
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily

  2. XM_017711460.2 → XP_017566949.1  PR domain zinc finger protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A3B4EH79
    Related
    ENSPNAP00000035852.2, ENSPNAT00000029437.2
Nucleotide Protein
Heading Accession and Version

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