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zbtb42 zinc finger and BTB domain containing 42 [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108430647, updated on 14-Mar-2024

Summary

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Gene symbol
zbtb42
Gene description
zinc finger and BTB domain containing 42
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 10 NC_051220.1 (18094219..18102171, complement)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243845.1 (593821..601293)

Chromosome 10 - NC_051220.1Genomic Context describing neighboring genes Neighboring gene adenylosuccinate synthase 1 Neighboring gene SIVA1, apoptosis-inducing factor Neighboring gene v-akt murine thymoma viral oncogene homolog 1 Neighboring gene centrosomal protein 170Ba

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051220.1 Reference fPygNat1.pri

    Range
    18094219..18102171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017703258.2 → XP_017558747.1  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    A0A3B4EAA0

  2. XM_037542267.1 → XP_037398164.1  zinc finger and BTB domain-containing protein 18 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:431 → 540
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:471 → 491
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18325
    Location:15 → 142
    BTB_POZ_ZBTB18_2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18.2 and similar proteins
    pfam13465
    Location:484 → 506
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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