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c1d C1D nuclear receptor corepressor [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108425421, updated on 14-Mar-2024

Summary

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Gene symbol
c1d
Gene description
C1D nuclear receptor corepressor
See related
EnsemblRapid:ENSPNAG00000036430
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 5 NC_051215.1 (26979446..26982890)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243786.1 (123357..126791, complement)

Chromosome 5 - NC_051215.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family G (WHITE), member 2c Neighboring gene solute carrier family 29 member 3 Neighboring gene uncharacterized LOC108420892 Neighboring gene ETAA1 activator of ATR kinase b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear nucleic acid-binding protein C1D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051215.1 Reference fPygNat1.pri

    Range
    26979446..26982890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017694053.2 → XP_017549542.1  nuclear nucleic acid-binding protein C1D

    UniProtKB/TrEMBL
    A0A3B4DC18
    Related
    ENSPNAP00000057109.1, ENSPNAT00000052936.1
    Conserved Domains (1) summary
    pfam04000
    Location:37 → 95
    Sas10_Utp3; Sas10/Utp3/C1D family

  2. XM_037538940.1 → XP_037394837.1  nuclear nucleic acid-binding protein C1D

    UniProtKB/TrEMBL
    A0A3B4DC18
    Conserved Domains (1) summary
    pfam04000
    Location:37 → 95
    Sas10_Utp3; Sas10/Utp3/C1D family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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