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tbc1d1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108413603, updated on 14-Mar-2024

Summary

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Gene symbol
tbc1d1
Gene description
TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
See related
EnsemblRapid:ENSPNAG00000015869
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
27
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 22 NC_051232.1 (2086980..2195027, complement)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016245006.1 (250..95544)

Chromosome 22 - NC_051232.1Genomic Context describing neighboring genes Neighboring gene Kruppel-like factor 3 (basic) Neighboring gene uncharacterized LOC119261988 Neighboring gene FERM and PDZ domain-containing protein 1 Neighboring gene phosphoglucomutase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
TBC1 domain family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051232.1 Reference fPygNat1.pri

    Range
    2086980..2195027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037532879.1 → XP_037388776.1  TBC1 domain family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B4DYW1
    Related
    ENSPNAP00000068926.1, ENSPNAT00000071912.1
    Conserved Domains (3) summary
    smart00164
    Location:870 → 1088
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd01269
    Location:220 → 419
    PTB_TBC1D1_like; TBC1 domain family member 1 and related proteins Phosphotyrosine-binding (PTB) domain
    cl17171
    Location:45 → 184
    PH-like; Pleckstrin homology-like domain

  2. XM_037532878.1 → XP_037388775.1  TBC1 domain family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4DYW1
    Related
    ENSPNAP00000029597.2, ENSPNAT00000016872.2
    Conserved Domains (4) summary
    smart00164
    Location:936 → 1154
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd01269
    Location:220 → 419
    PTB_TBC1D1_like; TBC1 domain family member 1 and related proteins Phosphotyrosine-binding (PTB) domain
    pfam11830
    Location:846 → 884
    DUF3350; Domain of unknown function (DUF3350)
    cl17171
    Location:45 → 184
    PH-like; Pleckstrin homology-like domain

  3. XM_037532880.1 → XP_037388777.1  TBC1 domain family member 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B4CFJ3
    Related
    ENSPNAP00000010238.2, ENSPNAT00000035639.2
    Conserved Domains (4) summary
    smart00164
    Location:848 → 1066
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd01269
    Location:220 → 419
    PTB_TBC1D1_like; TBC1 domain family member 1 and related proteins Phosphotyrosine-binding (PTB) domain
    pfam11830
    Location:758 → 796
    DUF3350; Domain of unknown function (DUF3350)
    cl17171
    Location:45 → 184
    PH-like; Pleckstrin homology-like domain

  4. XM_017686212.2 → XP_017541701.1  TBC1 domain family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A3B4DYW1
    Related
    ENSPNAP00000060806.1, ENSPNAT00000080144.1

  5. XM_037532881.1 → XP_037388778.1  TBC1 domain family member 1 isoform X6

    UniProtKB/TrEMBL
    A0A3B4DYW1
    Conserved Domains (3) summary
    smart00164
    Location:722 → 940
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd01269
    Location:6 → 205
    PTB_TBC1D1_like; TBC1 domain family member 1 and related proteins Phosphotyrosine-binding (PTB) domain
    pfam11830
    Location:632 → 670
    DUF3350; Domain of unknown function (DUF3350)

  6. XM_017686213.2 → XP_017541702.1  TBC1 domain family member 1 isoform X5

    UniProtKB/TrEMBL
    A0A3B4DYW1
Nucleotide Protein
Heading Accession and Version

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