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ZYX zyxin [ Manis javanica (Malayan pangolin) ]

Gene ID: 108404386, updated on 14-Mar-2024

Summary

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Gene symbol
ZYX
Gene description
zyxin
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436148.1 (318176..327831, complement)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016539304.1 (21433..30431, complement)

NW_023436148.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 2F1-like Neighboring gene EPH receptor A1 Neighboring gene family with sequence similarity 131 member B Neighboring gene chloride voltage-gated channel 1 Neighboring gene caspase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zyxin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436148.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    318176..327831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036994517.1 → XP_036850412.1  zyxin isoform X1

    Conserved Domains (4) summary
    cd09353
    Location:456 → 515
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:516 → 582
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:2 → 377
    PHA03247; large tegument protein UL36; Provisional
    cl02475
    Location:352 → 438
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  2. XM_036994516.1 → XP_036850411.1  zyxin isoform X1

    Conserved Domains (4) summary
    cd09353
    Location:456 → 515
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:516 → 582
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:2 → 377
    PHA03247; large tegument protein UL36; Provisional
    cl02475
    Location:352 → 438
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  3. XM_036994519.1 → XP_036850414.1  zyxin isoform X3

    Conserved Domains (4) summary
    cd09353
    Location:425 → 484
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:485 → 551
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:5 → 319
    PHA03247; large tegument protein UL36; Provisional
    cl02475
    Location:321 → 407
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  4. XM_036994515.1 → XP_036850410.1  zyxin isoform X1

    Conserved Domains (4) summary
    cd09353
    Location:456 → 515
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:516 → 582
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:2 → 377
    PHA03247; large tegument protein UL36; Provisional
    cl02475
    Location:352 → 438
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  5. XM_036994514.1 → XP_036850409.1  zyxin isoform X1

    Conserved Domains (4) summary
    cd09353
    Location:456 → 515
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:516 → 582
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:2 → 377
    PHA03247; large tegument protein UL36; Provisional
    cl02475
    Location:352 → 438
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  6. XM_036994520.1 → XP_036850415.1  zyxin isoform X4

    Conserved Domains (4) summary
    cd09353
    Location:414 → 473
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:474 → 540
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:5 → 319
    PHA03247; large tegument protein UL36; Provisional
    cl02475
    Location:321 → 407
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  7. XM_036994518.1 → XP_036850413.1  zyxin isoform X2

    Conserved Domains (4) summary
    cd09353
    Location:445 → 504
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:505 → 571
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:2 → 377
    PHA03247; large tegument protein UL36; Provisional
    cl02475
    Location:352 → 438
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
Heading Accession and Version

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