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ATG16L1 autophagy related 16 like 1 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108404351, updated on 14-Mar-2024

Summary

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Gene symbol
ATG16L1
Gene description
autophagy related 16 like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436186.1 (7245313..7280889)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016539273.1 (78805..110459, complement)

NW_023436186.1Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene uncharacterized LOC108404354 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-antigen visual arrestin Neighboring gene diacylglycerol kinase delta Neighboring gene uncharacterized LOC118968203

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 16-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436186.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    7245313..7280889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036997740.1 → XP_036853635.1  autophagy-related protein 16-1 isoform X1

    Conserved Domains (4) summary
    COG4942
    Location:155 → 304
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    cd00200
    Location:353 → 641
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:363 → 400
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 226
    ATG16; Autophagy protein 16 (ATG16)

  2. XM_036997741.1 → XP_036853636.1  autophagy-related protein 16-1 isoform X2

    Conserved Domains (4) summary
    COG4942
    Location:155 → 304
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    cd00200
    Location:337 → 625
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:347 → 384
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 226
    ATG16; Autophagy protein 16 (ATG16)

  3. XM_036997743.1 → XP_036853638.1  autophagy-related protein 16-1 isoform X4

    Conserved Domains (3) summary
    cd00200
    Location:318 → 606
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:328 → 365
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 226
    ATG16; Autophagy protein 16 (ATG16)

  4. XM_036997746.1 → XP_036853641.1  autophagy-related protein 16-1 isoform X7

    Conserved Domains (3) summary
    cd00200
    Location:289 → 577
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:299 → 336
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 226
    ATG16; Autophagy protein 16 (ATG16)

  5. XM_036997742.1 → XP_036853637.1  autophagy-related protein 16-1 isoform X3

    Conserved Domains (4) summary
    COG4942
    Location:135 → 284
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    cd00200
    Location:333 → 621
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:343 → 380
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

  6. XM_036997744.1 → XP_036853639.1  autophagy-related protein 16-1 isoform X5

    Conserved Domains (4) summary
    COG4942
    Location:135 → 284
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    cd00200
    Location:317 → 605
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:327 → 364
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

  7. XM_036997745.1 → XP_036853640.1  autophagy-related protein 16-1 isoform X6

    Conserved Domains (3) summary
    cd00200
    Location:298 → 586
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:308 → 345
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

  8. XM_017671885.2 → XP_017527374.1  autophagy-related protein 16-1 isoform X8

Nucleotide Protein
Heading Accession and Version

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