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PKP3 plakophilin 3 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108401887, updated on 14-Mar-2024

Summary

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Gene symbol
PKP3
Gene description
plakophilin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436232.1 (28140..37594, complement)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016536845.1 (8350..17819, complement)

NW_023436232.1Genomic Context describing neighboring genes Neighboring gene anoctamin 9 Neighboring gene single Ig and TIR domain containing Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 4 Neighboring gene interferon-induced transmembrane protein 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plakophilin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436232.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    28140..37594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017668087.2 → XP_017523576.2  plakophilin-3

    Conserved Domains (3) summary
    smart00185
    Location:406 → 446
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:335 → 360
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:368 → 402
    Arm; Armadillo/beta-catenin-like repeat
Nucleotide Protein
Heading Accession and Version

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