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AJUBA ajuba LIM protein [ Manis javanica (Malayan pangolin) ]

Gene ID: 108400015, updated on 14-Mar-2024

Summary

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Gene symbol
AJUBA
Gene description
ajuba LIM protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436019.1 (4092948..4102801)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016535245.1 (348749..360507)

NW_023436019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C14orf93-like Neighboring gene chromosome unknown C14orf93 homolog Neighboring gene HAUS augmin like complex subunit 4 Neighboring gene uncharacterized LOC108400008

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of hippo signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of miRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hypoxia IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM domain-containing protein ajuba

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436019.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    4092948..4102801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017665134.2 → XP_017520623.1  LIM domain-containing protein ajuba isoform X1

  2. XM_017665135.2 → XP_017520624.1  LIM domain-containing protein ajuba isoform X2

  3. XM_037017337.1 → XP_036873232.1  LIM domain-containing protein ajuba isoform X3

    Conserved Domains (3) summary
    cd09355
    Location:80 → 132
    LIM2_Ajuba_like; The second LIM domain of Ajuba-like proteins
    cd09438
    Location:140 → 201
    LIM3_Ajuba_like; The third LIM domain of Ajuba-like proteins
    cl02475
    Location:15 → 68
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  4. XM_037017338.1 → XP_036873233.1  LIM domain-containing protein ajuba isoform X4

    Conserved Domains (1) summary
    cl02475
    Location:46 → 107
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  5. XM_017665136.2 → XP_017520625.1  LIM domain-containing protein ajuba isoform X4

    Conserved Domains (1) summary
    cl02475
    Location:46 → 107
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
Heading Accession and Version

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