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SRR serine racemase [ Manis javanica (Malayan pangolin) ]

Gene ID: 108391804, updated on 14-Mar-2024

Summary

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Gene symbol
SRR
Gene description
serine racemase
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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See SRR in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436083.1 (1931073..1945202, complement)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016529569.1 (108973..121394, complement)

NW_023436083.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene TSR1 ribosome maturation factor Neighboring gene SMG6 nonsense mediated mRNA decay factor Neighboring gene U6 spliceosomal RNA Neighboring gene HIC ZBTB transcriptional repressor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-serine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables threonine racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-serine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in L-serine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pyruvate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine racemase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436083.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    1931073..1945202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017651606.2 → XP_017507095.1  serine racemase isoform X3

  2. XM_017651601.2 → XP_017507090.1  serine racemase isoform X1

    Conserved Domains (1) summary
    cl00342
    Location:10 → 333
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

  3. XM_017651605.2 → XP_017507094.1  serine racemase isoform X3

  4. XM_017651603.2 → XP_017507092.1  serine racemase isoform X1

    Conserved Domains (1) summary
    cl00342
    Location:10 → 333
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

  5. XM_017651600.2 → XP_017507089.1  serine racemase isoform X1

    Conserved Domains (1) summary
    cl00342
    Location:10 → 333
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

  6. XM_017651604.2 → XP_017507093.1  serine racemase isoform X3

  7. XM_017651602.2 → XP_017507091.1  serine racemase isoform X1

    Conserved Domains (1) summary
    cl00342
    Location:10 → 333
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

  8. XM_017651598.2 → XP_017507087.1  serine racemase isoform X1

    Conserved Domains (1) summary
    cl00342
    Location:10 → 333
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

  9. XM_037022828.1 → XP_036878723.1  serine racemase isoform X2

    Conserved Domains (1) summary
    cl00342
    Location:10 → 333
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
Nucleotide Protein
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