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WDSUB1 WD repeat, sterile alpha motif and U-box domain containing 1 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108317213, updated on 14-Mar-2024

Summary

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Gene symbol
WDSUB1
Gene description
WD repeat, sterile alpha motif and U-box domain containing 1
See related
Ensembl:ENSCCAG00000026210
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See WDSUB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107325.1 (3559819..3611145, complement)

NW_016107325.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 Neighboring gene glutathione S-transferase Mu 3-like Neighboring gene bromodomain adjacent to zinc finger domain 2B Neighboring gene 40S ribosomal protein S3a-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107325 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat, SAM and U-box domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107325.1 Reference Cebus_imitator-1.0

    Range
    3559819..3611145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017547547.2 → XP_017403036.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X1

  2. XM_017547541.1 → XP_017403030.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X1

  3. XM_017547610.2 → XP_017403099.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X6

  4. XM_017547600.2 → XP_017403089.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X6

  5. XM_017547554.2 → XP_017403043.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X1

  6. XM_017547608.2 → XP_017403097.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X6

  7. XM_017547616.2 → XP_017403105.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X9

  8. XM_037745414.1 → XP_037601342.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X8

    Conserved Domains (4) summary
    cd09505
    Location:235 → 306
    SAM_WDSUB1; SAM domain of WDSUB1 proteins
    cd00200
    Location:3 → 216
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:16 → 52
    7WD40; WD40 repeat [structural motif]
    pfam04564
    Location:311 → 383
    U-box; U-box domain

  9. XM_037745413.1 → XP_037601341.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X7

    Conserved Domains (4) summary
    cd00200
    Location:3 → 216
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:16 → 52
    7WD40; WD40 repeat [structural motif]
    pfam04564
    Location:340 → 412
    U-box; U-box domain
    cl15755
    Location:235 → 335
    SAM_superfamily; SAM (Sterile alpha motif )

  10. XM_017547577.2 → XP_017403066.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A2K5QLR4

  11. XM_017547593.2 → XP_017403082.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A2K5QLP7
    Related
    ENSCCAP00000016818.1, ENSCCAT00000034271.1

  12. XM_017547568.2 → XP_017403057.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5QLQ0, A0A2K5QLR4
    Related
    ENSCCAP00000016814.1, ENSCCAT00000034268.1

  13. XM_017547538.2 → XP_017403027.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X1

  14. XM_017547561.2 → XP_017403050.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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