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COL4A4 collagen type IV alpha 4 chain [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108304798, updated on 14-Mar-2024

Summary

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Gene symbol
COL4A4
Gene description
collagen type IV alpha 4 chain
See related
Ensembl:ENSCCAG00000022574
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
52
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107372.1 (4252648..4439075)

NW_016107372.1Genomic Context describing neighboring genes Neighboring gene transmembrane 4 L six family member 20 Neighboring gene collagen alpha-3(IV) chain Neighboring gene mitochondrial fission factor Neighboring gene small nucleolar RNA SNORA48 Neighboring gene rhomboid domain containing 1 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107372 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-4(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107372.1 Reference Cebus_imitator-1.0

    Range
    4252648..4439075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037738747.1 → XP_037594675.1  collagen alpha-4(IV) chain isoform X3

    Related
    ENSCCAP00000009718.1, ENSCCAT00000027104.1
    Conserved Domains (4) summary
    PRK14959
    Location:336 → 442
    PRK14959; DNA polymerase III subunits gamma and tau; Provisional
    pfam01391
    Location:826 → 875
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1461 → 1565
    C4; C-terminal tandem repeated domain in type 4 procollagen
    cl02467
    Location:1569 → 1604
    C4; C-terminal tandem repeated domain in type 4 procollagen

  2. XM_017529106.2 → XP_017384595.1  collagen alpha-4(IV) chain isoform X1

  3. XM_037738746.1 → XP_037594674.1  collagen alpha-4(IV) chain isoform X2

    Conserved Domains (3) summary
    PRK14959
    Location:336 → 442
    PRK14959; DNA polymerase III subunits gamma and tau; Provisional
    pfam01391
    Location:826 → 882
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1404 → 1508
    C4; C-terminal tandem repeated domain in type 4 procollagen

  4. XM_017529108.2 → XP_017384597.1  collagen alpha-4(IV) chain isoform X1

  5. XM_017529107.2 → XP_017384596.1  collagen alpha-4(IV) chain isoform X1

  6. XM_037738748.1 → XP_037594676.1  collagen alpha-4(IV) chain isoform X4

    Conserved Domains (3) summary
    PRK14959
    Location:62 → 168
    PRK14959; DNA polymerase III subunits gamma and tau; Provisional
    pfam01391
    Location:552 → 601
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1187 → 1291
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
Heading Accession and Version

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