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USH2A usherin [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108289703, updated on 14-Mar-2024

Summary

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Gene symbol
USH2A
Gene description
usherin
See related
Ensembl:ENSCCAG00000022774
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
73
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107726.1 (1132581..1909839, complement)

NW_016107726.1Genomic Context describing neighboring genes Neighboring gene voltage-dependent anion-selective channel protein 1-like Neighboring gene small nucleolar RNA SNORD116 Neighboring gene potassium channel tetramerization domain containing 3 Neighboring gene uncharacterized LOC108289704 Neighboring gene U6 spliceosomal RNA Neighboring gene 28S ribosomal protein S18b, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107726 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
usherin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107726.1 Reference Cebus_imitator-1.0

    Range
    1132581..1909839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037731607.1 → XP_037587535.1  usherin isoform X2

    Conserved Domains (9) summary
    smart00060
    Location:1366 → 1451
    FN3; Fibronectin type 3 domain
    smart00180
    Location:847 → 897
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00560
    Location:146 → 283
    LamGL; LamG-like jellyroll fold domain
    cd00055
    Location:950 → 1000
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00063
    Location:2532 → 2618
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00110
    Location:1519 → 1678
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00041
    Location:1150 → 1227
    fn3; Fibronectin type III domain
    pfam00053
    Location:641 → 691
    Laminin_EGF; Laminin EGF domain
    cl02806
    Location:291 → 516
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_017509227.2 → XP_017364716.1  usherin isoform X1

    UniProtKB/TrEMBL
    A0A2K5Q2G5
    Related
    ENSCCAP00000010078.1, ENSCCAT00000027466.1
    Conserved Domains (9) summary
    smart00060
    Location:1366 → 1451
    FN3; Fibronectin type 3 domain
    smart00180
    Location:847 → 897
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00560
    Location:146 → 283
    LamGL; LamG-like jellyroll fold domain
    cd00055
    Location:950 → 1000
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00063
    Location:2533 → 2619
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00110
    Location:1519 → 1678
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00041
    Location:1150 → 1227
    fn3; Fibronectin type III domain
    pfam00053
    Location:641 → 691
    Laminin_EGF; Laminin EGF domain
    cl02806
    Location:291 → 516
    Laminin_N; Laminin N-terminal (Domain VI)

  3. XM_037731606.1 → XP_037587534.1  usherin isoform X1

    UniProtKB/TrEMBL
    A0A2K5Q2G5
    Conserved Domains (9) summary
    smart00060
    Location:1366 → 1451
    FN3; Fibronectin type 3 domain
    smart00180
    Location:847 → 897
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00560
    Location:146 → 283
    LamGL; LamG-like jellyroll fold domain
    cd00055
    Location:950 → 1000
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00063
    Location:2533 → 2619
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00110
    Location:1519 → 1678
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00041
    Location:1150 → 1227
    fn3; Fibronectin type III domain
    pfam00053
    Location:641 → 691
    Laminin_EGF; Laminin EGF domain
    cl02806
    Location:291 → 516
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
Heading Accession and Version

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