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SS18L1 SS18L1 subunit of BAF chromatin remodeling complex [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108285945, updated on 14-Mar-2024

Summary

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Gene symbol
SS18L1
Gene description
SS18L1 subunit of BAF chromatin remodeling complex
See related
Ensembl:ENSCCAG00000034514
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See SS18L1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107626.1 (3248182..3286607)

NW_016107626.1Genomic Context describing neighboring genes Neighboring gene LSM family member 14B Neighboring gene proteasome 20S subunit alpha 7 Neighboring gene mitochondrial ribosome associated GTPase 2 Neighboring gene uncharacterized LOC119467620 Neighboring gene histamine receptor H3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107626 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-responsive transactivator
Names
SS18L1, nBAF chromatin remodeling complex subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107626.1 Reference Cebus_imitator-1.0

    Range
    3248182..3286607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017503471.2 → XP_017358960.1  calcium-responsive transactivator isoform X1

    UniProtKB/TrEMBL
    A0A2K5RXV6
    Related
    ENSCCAP00000032950.1, ENSCCAT00000050716.1
    Conserved Domains (1) summary
    pfam05030
    Location:14 → 73
    SSXT; SSXT protein (N-terminal region)

  2. XM_037729572.1 → XP_037585500.1  calcium-responsive transactivator isoform X2

    UniProtKB/TrEMBL
    A0A2K5RXS9
    Conserved Domains (1) summary
    pfam05030
    Location:1 → 50
    SSXT; SSXT protein (N-terminal region)

  3. XM_017503472.2 → XP_017358961.1  calcium-responsive transactivator isoform X2

    UniProtKB/TrEMBL
    A0A2K5RXS9
    Related
    ENSCCAP00000032953.1, ENSCCAT00000050719.1
    Conserved Domains (1) summary
    pfam05030
    Location:1 → 50
    SSXT; SSXT protein (N-terminal region)
Nucleotide Protein
Heading Accession and Version

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