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puraa purine-rich element binding protein Aa [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108278885, updated on 14-Mar-2024

Summary

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Gene symbol
puraa
Gene description
purine-rich element binding protein Aa
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
pura
Orthologs
zebrafish all
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Genomic context

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See puraa in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 18 NC_030433.2 (14147875..14157993)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 18 NC_030433.1 (13654068..13664249)

Chromosome 18 - NC_030433.2Genomic Context describing neighboring genes Neighboring gene ependymin-like 2 Neighboring gene neuregulin 2a Neighboring gene uncharacterized LOC108279072 Neighboring gene CXXC finger protein 5a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables purine-rich negative regulatory element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
purine-rich element binding protein Aa
Names
Transcriptional activator protein Pur-alpha
purine rich element binding protein A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030433.2 Reference Coco_2.0 Primary Assembly

    Range
    14147875..14157993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047162016.2 → XP_047017972.1  purine-rich element binding protein Aa

    UniProtKB/TrEMBL
    W5UAZ6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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