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sox10 SRY-box transcription factor 10 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108272500, updated on 14-Mar-2024

Summary

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Gene symbol
sox10
Gene description
SRY-box transcription factor 10
See related
Ensembl:ENSIPUG00000000810
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 12 NC_030427.2 (33286336..33300423)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 12 NC_030427.1 (27754118..27764424)

Chromosome 12 - NC_030427.2Genomic Context describing neighboring genes Neighboring gene KDEL endoplasmic reticulum protein retention receptor 3 Neighboring gene potassium inwardly rectifying channel subfamily J member 4 Neighboring gene RNA polymerase II, I and III subunit F Neighboring gene uncharacterized LOC124628704

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in enteric nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peripheral nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-10
Names
SRY-box 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030427.2 Reference Coco_2.0 Primary Assembly

    Range
    33286336..33300423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017480938.3 → XP_017336427.2  transcription factor SOX-10

    UniProtKB/TrEMBL
    A0A2D0S116
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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