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sec16b SEC16 homolog B, endoplasmic reticulum export factor [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108272130, updated on 14-Mar-2024

Summary

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Gene symbol
sec16b
Gene description
SEC16 homolog B, endoplasmic reticulum export factor
See related
Ensembl:ENSIPUG00000011696
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 11 NC_030426.2 (16584615..16606966)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 11 NC_030426.1 (11205136..11227492, complement)

Chromosome 11 - NC_030426.2Genomic Context describing neighboring genes Neighboring gene down-regulator of transcription 1 Neighboring gene guanine nucleotide binding protein (G protein), gamma 12b Neighboring gene growth arrest and DNA-damage-inducible, alpha, b Neighboring gene zinc finger protein 648 Neighboring gene glutamine synthetase Neighboring gene glutamate-ammonia ligase (glutamine synthase) b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in COPII vesicle coating IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec16B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030426.2 Reference Coco_2.0 Primary Assembly

    Range
    16584615..16606966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047158495.2 → XP_047014451.1  protein transport protein Sec16B isoform X4

    UniProtKB/TrEMBL
    A0A979F2Z3

  2. XM_053683640.1 → XP_053539615.1  protein transport protein Sec16B isoform X1

    UniProtKB/TrEMBL
    A0A2D0RZ95

  3. XM_053683641.1 → XP_053539616.1  protein transport protein Sec16B isoform X3

    UniProtKB/TrEMBL
    A0A9F7RCF8

  4. XM_017480336.3 → XP_017335825.1  protein transport protein Sec16B isoform X2

    UniProtKB/TrEMBL
    A0A2D0S0T9

  5. XM_017480335.3 → XP_017335824.1  protein transport protein Sec16B isoform X1

    UniProtKB/TrEMBL
    A0A2D0RZ95
    Related
    ENSIPUP00000017249.1
Nucleotide Protein
Heading Accession and Version

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