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LOC108271289 protein lin-28 homolog B [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108271289, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108271289
Gene description
protein lin-28 homolog B
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 1 NC_030416.2 (20358370..20367426)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 1 NC_030416.1 (19456700..19465763)

Chromosome 1 - NC_030416.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108263362 Neighboring gene HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 Neighboring gene blood vessel epicardial substance Neighboring gene popeye domain containing 3 Neighboring gene syntaxin 12, like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein lin-28 homolog A; protein lin-28 homolog B
Names
lin-28 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030416.2 Reference Coco_2.0 Primary Assembly

    Range
    20358370..20367426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017478805.3 → XP_017334294.1  protein lin-28 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A2D0RUX5

  2. XM_017478896.3 → XP_017334385.1  protein lin-28 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A2D0RWQ6

  3. XM_053682493.1 → XP_053538468.1  protein lin-28 homolog B isoform X3

    UniProtKB/TrEMBL
    A0A9F7RKY1
Nucleotide Protein
Heading Accession and Version

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