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nrde2 NRDE-2, necessary for RNA interference, domain containing [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108270181, updated on 14-Mar-2024

Summary

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Gene symbol
nrde2
Gene description
NRDE-2, necessary for RNA interference, domain containing
See related
Ensembl:ENSIPUG00000016129
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See nrde2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 9 NC_030424.2 (4465368..4474395)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 9 NC_030424.1 (6057548..6065650)

Chromosome 9 - NC_030424.2Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L57 Neighboring gene tetratricopeptide repeat domain 7B Neighboring gene calmodulin 1a Neighboring gene EF-hand calcium binding domain 2 Neighboring gene family with sequence similarity 149 member B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear exosome regulator NRDE2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030424.2 Reference Coco_2.0 Primary Assembly

    Range
    4465368..4474395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017476595.3 → XP_017332084.2  nuclear exosome regulator NRDE2

    UniProtKB/TrEMBL
    A0A2D0RNJ8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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