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znf830 zinc finger protein 830 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108267640, updated on 14-Mar-2024

Summary

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Gene symbol
znf830
Gene description
zinc finger protein 830
See related
Ensembl:ENSIPUG00000010922
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 7 NC_030422.2 (27532007..27533630, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 7 NC_030422.1 (24967548..24969169, complement)

Chromosome 7 - NC_030422.2Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor L2 Neighboring gene serine/arginine-rich splicing factor 11 Neighboring gene EF-hand calcium binding domain 14 Neighboring gene RING finger protein 11 Neighboring gene retinoid isomerohydrolase RPE65 a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic DNA damage checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic DNA replication checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 830

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030422.2 Reference Coco_2.0 Primary Assembly

    Range
    27532007..27533630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017471920.3 → XP_017327409.1  zinc finger protein 830

    UniProtKB/TrEMBL
    W5UCV8
    Related
    ENSIPUP00000016085.1
Nucleotide Protein
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Gene LinkOut

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