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LOC108266932 activin receptor type-1C [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108266932, updated on 14-Mar-2024

Summary

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Gene symbol
LOC108266932
Gene description
activin receptor type-1C
See related
Ensembl:ENSIPUG00000005626
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
acvr1c
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (31514436..31559984, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (2296393..2339743)

Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108266672 Neighboring gene uncharacterized LOC128632885 Neighboring gene cytohesin 1 interacting protein Neighboring gene activin receptor type-1 Neighboring gene coiled-coil domain-containing protein 148 Neighboring gene uridine phosphorylase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables activin receptor activity, type I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of activin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activin receptor type-1C
Names
activin A receptor type 1C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030421.2 Reference Coco_2.0 Primary Assembly

    Range
    31514436..31559984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053680592.1 → XP_053536567.1  activin receptor type-1C isoform X1

    UniProtKB/TrEMBL
    A0A9F7TKE1

  2. XM_053680593.1 → XP_053536568.1  activin receptor type-1C isoform X2

    UniProtKB/TrEMBL
    W5U7G3

  3. XM_017470766.3 → XP_017326255.1  activin receptor type-1C isoform X2

    UniProtKB/TrEMBL
    W5U7G3
    Related
    ENSIPUP00000008231.1
Nucleotide Protein
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