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ikbkb inhibitor of nuclear factor kappa B kinase subunit beta [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108265675, updated on 14-Mar-2024

Summary

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Gene symbol
ikbkb
Gene description
inhibitor of nuclear factor kappa B kinase subunit beta
See related
Ensembl:ENSIPUG00000024905
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 5 NC_030420.2 (14220675..14288016)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 5 NC_030420.1 (14557899..14625369, complement)

Chromosome 5 - NC_030420.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108265095 Neighboring gene plasminogen activator, tissue Neighboring gene uncharacterized LOC108265676 Neighboring gene B-cell linker protein Neighboring gene transcription factor Dp-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables IkappaB kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of IkappaB kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inhibitor of nuclear factor kappa-B kinase subunit beta
Names
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030420.2 Reference Coco_2.0 Primary Assembly

    Range
    14220675..14288016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017468247.2 → XP_017323736.1  inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1

    UniProtKB/TrEMBL
    A0A2D0R135
    Related
    ENSIPUP00000037211.1

  2. XM_053680242.1 → XP_053536217.1  inhibitor of nuclear factor kappa-B kinase subunit beta isoform X2

    UniProtKB/TrEMBL
    A0A9F7RIX7

  3. XM_053680243.1 → XP_053536218.1  inhibitor of nuclear factor kappa-B kinase subunit beta isoform X2

    UniProtKB/TrEMBL
    A0A9F7RIX7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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