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mtmr3 myotubularin related protein 3 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108265535, updated on 14-Mar-2024

Summary

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Gene symbol
mtmr3
Gene description
myotubularin related protein 3
See related
Ensembl:ENSIPUG00000024525
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 5 NC_030420.2 (17203770..17328223, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 5 NC_030420.1 (11833784..11926789)

Chromosome 5 - NC_030420.2Genomic Context describing neighboring genes Neighboring gene BICD family like cargo adaptor 1 Neighboring gene citron Rho-interacting kinase Neighboring gene uncharacterized LOC128632848 Neighboring gene cut-like homeobox 2b Neighboring gene protein phosphatase targeting COQ7 a Neighboring gene RAD9 checkpoint clamp component B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myotubularin-related protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030420.2 Reference Coco_2.0 Primary Assembly

    Range
    17203770..17328223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053680268.1 → XP_053536243.1  myotubularin-related protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A9F7RJ90

  2. XM_053680266.1 → XP_053536241.1  myotubularin-related protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A9F7R696

  3. XM_053680265.1 → XP_053536240.1  myotubularin-related protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A979EUH9

  4. XM_053680264.1 → XP_053536239.1  myotubularin-related protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A9F7TKG0

  5. XM_047155504.2 → XP_047011460.1  myotubularin-related protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A979EUH9

  6. XM_053680262.1 → XP_053536237.1  myotubularin-related protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A979EUH5

  7. XM_047155502.2 → XP_047011458.1  myotubularin-related protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A979EUH5

  8. XM_053680263.1 → XP_053536238.1  myotubularin-related protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A979EUH5

  9. XM_017467964.3 → XP_017323453.2  myotubularin-related protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A2D0QYH2

  10. XM_047155510.2 → XP_047011466.1  myotubularin-related protein 3 isoform X10

    UniProtKB/TrEMBL
    A0A979EUG1

  11. XM_017467967.3 → XP_017323456.1  myotubularin-related protein 3 isoform X9

    UniProtKB/TrEMBL
    A0A2D0R0A8

  12. XM_053680269.1 → XP_053536244.1  myotubularin-related protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A9F7R4A7

  13. XM_053680267.1 → XP_053536242.1  myotubularin-related protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A9F7RA11

RNA

  1. XR_008396448.1 RNA Sequence

  2. XR_008396447.1 RNA Sequence

  3. XR_008396446.1 RNA Sequence

  4. XR_008396445.1 RNA Sequence

Nucleotide Protein
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