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mfsd12b major facilitator superfamily domain containing 12b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108264970, updated on 14-Mar-2024

Summary

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Gene symbol
mfsd12b
Gene description
major facilitator superfamily domain containing 12b
See related
Ensembl:ENSIPUG00000013821
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
mfsd12
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 5 NC_030420.2 (31821996..31833844)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 5 NC_030420.1 (30301053..30312052)

Chromosome 5 - NC_030420.2Genomic Context describing neighboring genes Neighboring gene casein kinase 1, gamma 2b Neighboring gene diencephalon/mesencephalon homeobox 2 Neighboring gene nuclear factor I/C Neighboring gene small integral membrane protein 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
major facilitator superfamily domain-containing protein 12
Names
major facilitator superfamily domain containing 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030420.2 Reference Coco_2.0 Primary Assembly

    Range
    31821996..31833844
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053680445.1 → XP_053536420.1  major facilitator superfamily domain-containing protein 12 isoform X3

    UniProtKB/TrEMBL
    A0A9F7R0B2

  2. XM_017466984.3 → XP_017322473.1  major facilitator superfamily domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A2D0QVM8
    Related
    ENSIPUP00000020373.1

  3. XM_017466985.3 → XP_017322474.1  major facilitator superfamily domain-containing protein 12 isoform X2

    UniProtKB/TrEMBL
    A0A2D0QVZ1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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