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LOC108264492 transmembrane 6 superfamily member 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108264492, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108264492
Gene description
transmembrane 6 superfamily member 1
See related
Ensembl:ENSIPUG00000016918
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
tm6sf1
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 4 NC_071284.1 (35611010..35617040)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) X NC_030419.1 (33576241..33604457, complement)

Chromosome 4 - NC_071284.1Genomic Context describing neighboring genes Neighboring gene WASP homolog associated with actin, golgi membranes and microtubules Neighboring gene homer scaffold protein 2 Neighboring gene HDGF like 3 Neighboring gene basonuclin zinc finger protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane 6 superfamily member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_071284.1 Reference Coco_2.0 Primary Assembly

    Range
    35611010..35617040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017466079.3 → XP_017321568.1  transmembrane 6 superfamily member 1

    UniProtKB/TrEMBL
    A0A2D0QT04
    Related
    ENSIPUP00000025016.1
Nucleotide Protein
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Gene LinkOut

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