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ppip5k1a diphosphoinositol pentakisphosphate kinase 1a [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108259302, updated on 14-Mar-2024

Summary

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Gene symbol
ppip5k1a
Gene description
diphosphoinositol pentakisphosphate kinase 1a
See related
Ensembl:ENSIPUG00000022957
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
ppip5k1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 27
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 27 NC_030442.2 (8660403..8698357)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 27 NC_030442.1 (10450344..10488078, complement)

Chromosome 27 - NC_030442.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 280D Neighboring gene uncharacterized LOC108259304 Neighboring gene mitochondrial methionyl-tRNA formyltransferase Neighboring gene microtubule-associated protein 1Aa Neighboring gene tumor protein p53 binding protein, 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables diphosphoinositol-pentakisphosphate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol heptakisphosphate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol hexakisphosphate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inositol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2
Names
diphosphoinositol pentakisphosphate kinase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030442.2 Reference Coco_2.0 Primary Assembly

    Range
    8660403..8698357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017458665.3 → XP_017314154.1  inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2D0Q8W8

  2. XM_047151693.2 → XP_047007649.1  inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 isoform X1

    UniProtKB/TrEMBL
    A0A979EIS7

  3. XM_017458668.3 → XP_017314157.1  inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 isoform X3

    UniProtKB/TrEMBL
    A0A2D0Q776
    Related
    ENSIPUP00000034175.1
Nucleotide Protein
Heading Accession and Version

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