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atp11a ATPase phospholipid transporting 11A [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108258841, updated on 14-Mar-2024

Summary

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Gene symbol
atp11a
Gene description
ATPase phospholipid transporting 11A
See related
Ensembl:ENSIPUG00000020705
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 26
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 26 NC_030441.2 (12872976..12980280)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 26 NC_030441.1 (11664887..11768329)

Chromosome 26 - NC_030441.2Genomic Context describing neighboring genes Neighboring gene mcf.2 cell line derived transforming sequence-like a Neighboring gene tubulin gamma complex component 3 Neighboring gene SRY-box transcription factor 1b Neighboring gene Rho guanine nucleotide exchange factor (GEF) 7b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipid-transporting ATPase IH

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030441.2 Reference Coco_2.0 Primary Assembly

    Range
    12872976..12980280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047151363.2 → XP_047007319.1  phospholipid-transporting ATPase IH isoform X3

    UniProtKB/TrEMBL
    A0A2D0Q4N8

  2. XM_017457775.3 → XP_017313264.1  phospholipid-transporting ATPase IH isoform X3

    UniProtKB/TrEMBL
    A0A2D0Q4N8
    Related
    ENSIPUP00000030810.1

  3. XM_017457773.3 → XP_017313262.1  phospholipid-transporting ATPase IH isoform X1

    UniProtKB/TrEMBL
    A0A2D0Q4N9

  4. XM_017457774.3 → XP_017313263.1  phospholipid-transporting ATPase IH isoform X2

    UniProtKB/TrEMBL
    A0A2D0Q3H1

  5. XM_053675975.1 → XP_053531950.1  phospholipid-transporting ATPase IH isoform X7

    UniProtKB/TrEMBL
    A0A9F7QSC6

  6. XM_017457779.3 → XP_017313268.1  phospholipid-transporting ATPase IH isoform X5

    UniProtKB/TrEMBL
    A0A2D0Q3H6

  7. XM_047151365.2 → XP_047007321.1  phospholipid-transporting ATPase IH isoform X4

    UniProtKB/TrEMBL
    A0A2D0Q6D5

  8. XM_017457780.3 → XP_017313269.1  phospholipid-transporting ATPase IH isoform X6

    UniProtKB/TrEMBL
    A0A2D0Q4P3
    Related
    ENSIPUP00000030889.1

  9. XM_017457777.3 → XP_017313266.1  phospholipid-transporting ATPase IH isoform X4

    UniProtKB/TrEMBL
    A0A2D0Q6D5
    Related
    ENSIPUP00000030831.1

  10. XM_047151366.2 → XP_047007322.1  phospholipid-transporting ATPase IH isoform X5

    UniProtKB/TrEMBL
    A0A2D0Q3H6

RNA

  1. XR_008393477.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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