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tpd52l1 tpd52 like 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108257891, updated on 14-Mar-2024

Summary

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Gene symbol
tpd52l1
Gene description
tpd52 like 1
See related
Ensembl:ENSIPUG00000005478
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 25
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 25 NC_030440.2 (14448158..14465905, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 25 NC_030440.1 (5339358..5357087)

Chromosome 25 - NC_030440.2Genomic Context describing neighboring genes Neighboring gene hes-related family bHLH transcription factor with YRPW motif 2 Neighboring gene HD domain containing 2 Neighboring gene ring finger protein 217 Neighboring gene sodium/potassium transporting ATPase interacting 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of MAP kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor protein D53
Names
tumor protein D52 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030440.2 Reference Coco_2.0 Primary Assembly

    Range
    14448158..14465905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017456018.3 → XP_017311507.1  tumor protein D53 isoform X2

    UniProtKB/TrEMBL
    A0A2D0PZQ3

  2. XM_053675553.1 → XP_053531528.1  tumor protein D53 isoform X3

    UniProtKB/TrEMBL
    A0A9F7TDT8

  3. XM_017456017.3 → XP_017311506.1  tumor protein D53 isoform X1

    UniProtKB/TrEMBL
    A0A2D0Q1E7
    Related
    ENSIPUP00000007954.1
Nucleotide Protein
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Gene LinkOut

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