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abcb9 ATP-binding cassette, sub-family B (MDR/TAP), member 9 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108255310, updated on 14-Mar-2024

Summary

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Gene symbol
abcb9
Gene description
ATP-binding cassette, sub-family B (MDR/TAP), member 9
See related
Ensembl:ENSIPUG00000022367
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 22 NC_030437.2 (2600732..2609968)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 22 NC_030437.1 (17723481..17732493, complement)

Chromosome 22 - NC_030437.2Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate and iron-dependent oxygenase domain containing 2 Neighboring gene uncharacterized LOC124626164 Neighboring gene VPS37B subunit of ESCRT-I a Neighboring gene protein phosphatase 3, catalytic subunit, gamma isozyme, a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification, characterization and phylogenetic analysis of 50 catfish ATP-binding cassette (ABC) transporter genes. Liu S, et al. PLoS One, 2013. PMID 23696857, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type oligopeptide transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family B member 9
Names
ATP binding cassette subfamily B member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030437.2 Reference Coco_2.0 Primary Assembly

    Range
    2600732..2609968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017451195.3 → XP_017306684.1  ATP-binding cassette sub-family B member 9

    UniProtKB/TrEMBL
    A0A2D0PL01
    Related
    ENSIPUP00000033282.1
Nucleotide Protein
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Gene LinkOut

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