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jade1 jade family PHD finger 1 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108249928, updated on 10-Apr-2024

Summary

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Gene symbol
jade1
Gene description
jade family PHD finger 1
See related
EnsemblRapid:ENSKMAG00010001334
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG10
Exon count:
13
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG10 NC_051439.1 (22161953..22172542)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094756.1 (78769..89310, complement)

Linkage Group LG10 - NC_051439.1Genomic Context describing neighboring genes Neighboring gene progesterone receptor membrane component 2 Neighboring gene acetylserotonin O-methyltransferase 2 Neighboring gene nuclear receptor binding SET domain protein 2 Neighboring gene leucine zipper-EF-hand containing transmembrane protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Jade-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051439.1 Reference ASM164957v2 Primary Assembly

    Range
    22161953..22172542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017439588.3 → XP_017295077.1  protein Jade-1

    UniProtKB/TrEMBL
    A0A3Q3AGV5
    Conserved Domains (2) summary
    COG5141
    Location:133 → 511
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15671
    Location:250 → 360
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins

  2. XM_017439586.3 → XP_017295075.1  protein Jade-1

    UniProtKB/TrEMBL
    A0A3Q3AGV5
    Conserved Domains (2) summary
    COG5141
    Location:133 → 511
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15671
    Location:250 → 360
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins

  3. XM_037977800.1 → XP_037833728.1  protein Jade-1

    UniProtKB/TrEMBL
    A0A3Q3AGV5
    Related
    ENSKMAP00010002382.1, ENSKMAT00010002576.1
    Conserved Domains (2) summary
    COG5141
    Location:133 → 511
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15671
    Location:250 → 360
    ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
Nucleotide Protein
Heading Accession and Version

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