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thumpd2 THUMP domain containing 2 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108243648, updated on 14-Mar-2024

Summary

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Gene symbol
thumpd2
Gene description
THUMP domain containing 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG22
Exon count:
11
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG22 NC_051451.1 (13765743..13770835, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094243.1 (2318189..2323260, complement)

Linkage Group LG22 - NC_051451.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 17 member 5 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 33 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 3 Neighboring gene uncharacterized LOC108243109 Neighboring gene solute carrier family 8 member 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051451.1 Reference ASM164957v2 Primary Assembly

    Range
    13765743..13770835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037973649.1 → XP_037829577.1  THUMP domain-containing protein 2 isoform X1

    Conserved Domains (2) summary
    smart00981
    Location:261 → 331
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:341 → 480
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_017429248.3 → XP_017284737.1  THUMP domain-containing protein 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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