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arhgef39 Rho guanine nucleotide exchange factor (GEF) 39 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108241847, updated on 10-Apr-2024

Summary

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Gene symbol
arhgef39
Gene description
Rho guanine nucleotide exchange factor (GEF) 39
See related
EnsemblRapid:ENSKMAG00010006840
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG1
Exon count:
12
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG1 NC_051430.1 (33384504..33426076)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094331.1 (469476..511031, complement)

Linkage Group LG1 - NC_051430.1Genomic Context describing neighboring genes Neighboring gene deoxyribose-phosphate aldolase (putative) Neighboring gene LIM domain only 3 Neighboring gene transmembrane protein 121B Neighboring gene makorin, ring finger protein, 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho guanine nucleotide exchange factor 39
Names
Rho guanine nucleotide exchange factor 39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051430.1 Reference ASM164957v2 Primary Assembly

    Range
    33384504..33426076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017426293.3 → XP_017281782.1  rho guanine nucleotide exchange factor 39 isoform X1

    Related
    ENSKMAP00010014474.1, ENSKMAT00010015057.1

  2. XM_017426294.3 → XP_017281783.1  rho guanine nucleotide exchange factor 39 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3ADH9

  3. XM_037981072.1 → XP_037837000.1  rho guanine nucleotide exchange factor 39 isoform X3

    Conserved Domains (2) summary
    pfam00621
    Location:31 → 184
    RhoGEF; RhoGEF domain
    cl17171
    Location:187 → 292
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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