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ubb ubiquitin B [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108233844, updated on 14-Mar-2024

Summary

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Gene symbol
ubb
Gene description
ubiquitin B
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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See ubb in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
4
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG13 NC_051442.1 (19565135..19568294)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094262.1 (3276511..3279610)

Linkage Group LG13 - NC_051442.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor corepressor 1 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class L Neighboring gene centromere protein V Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 5 Neighboring gene ER membrane protein complex subunit 6 Neighboring gene sedoheptulokinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyubiquitin-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051442.1 Reference ASM164957v2 Primary Assembly

    Range
    19565135..19568294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025005159.2 → XP_024860927.1  polyubiquitin-B isoform X3

    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

  2. XM_017412551.3 → XP_017268040.1  polyubiquitin-B isoform X1

    UniProtKB/TrEMBL
    A0A3Q3AYF2
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

  3. XM_017412552.3 → XP_017268041.1  polyubiquitin-B isoform X2

    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
Nucleotide Protein
Heading Accession and Version

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