U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC108232242 zinc finger protein 236 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108232242, updated on 10-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
LOC108232242
Gene description
zinc finger protein 236
See related
EnsemblRapid:ENSKMAG00010001908
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Also known as
znf236
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG16
Exon count:
34
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG16 NC_051445.1 (21754479..21834001)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094254.1 (5190199..5269442)

Linkage Group LG16 - NC_051445.1Genomic Context describing neighboring genes Neighboring gene prostaglandin reductase 3 Neighboring gene teashirt homolog 1 Neighboring gene zinc finger protein 516 Neighboring gene uncharacterized LOC119617785 Neighboring gene myelin basic protein-like Neighboring gene uncharacterized LOC112450315 Neighboring gene myelin basic protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein 236

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051445.1 Reference ASM164957v2 Primary Assembly

    Range
    21754479..21834001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017409872.3 → XP_017265361.1  zinc finger protein 236 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3H1V4
    Related
    ENSKMAP00010003570.1, ENSKMAT00010003810.1

  2. XM_037980276.1 → XP_037836204.1  zinc finger protein 236 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3H1V4
    Conserved Domains (6) summary
    COG5048
    Location:439 → 721
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:1109 → 1129
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1193 → 1213
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:189 → 210
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1121 → 1145
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:60 → 105
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  3. XM_037980277.1 → XP_037836205.1  zinc finger protein 236 isoform X3

    UniProtKB/TrEMBL
    A0A3Q3H1V4
    Related
    ENSKMAP00010003562.1, ENSKMAT00010003801.1
    Conserved Domains (6) summary
    COG5048
    Location:613 → 1027
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:1111 → 1131
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1195 → 1215
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:189 → 210
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1123 → 1147
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:60 → 105
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  4. XM_037980278.1 → XP_037836206.1  zinc finger protein 236 isoform X4

    UniProtKB/TrEMBL
    A0A3Q3H1V4
    Conserved Domains (5) summary
    COG5048
    Location:512 → 926
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:1010 → 1030
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1094 → 1114
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:88 → 109
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1022 → 1046
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.