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prpf39 PRP39 pre-mRNA processing factor 39 homolog (yeast) [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108231890, updated on 10-Apr-2024

Summary

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Gene symbol
prpf39
Gene description
PRP39 pre-mRNA processing factor 39 homolog (yeast)
See related
EnsemblRapid:ENSKMAG00010014445
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
15
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG19 NC_051448.1 (15237731..15244157, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094252.1 (1814544..1820926, complement)

Linkage Group LG19 - NC_051448.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 3 Neighboring gene FAU ubiquitin like and ribosomal protein S30 fusion a Neighboring gene ADP-ribosylation factor 6a Neighboring gene uncharacterized LOC119618000

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051448.1 Reference ASM164957v2 Primary Assembly

    Range
    15237731..15244157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025004371.2 → XP_024860139.2  pre-mRNA-processing factor 39 isoform X2

    Conserved Domains (1) summary
    COG5107
    Location:148 → 625
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  2. XM_017409289.3 → XP_017264778.1  pre-mRNA-processing factor 39 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3BAB0
    Related
    ENSKMAP00010031672.1, ENSKMAT00010032983.1

  3. XM_017409290.3 → XP_017264779.1  pre-mRNA-processing factor 39 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3BAB0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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