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Gm21627 predicted gene, 21627 [ Mus musculus (house mouse) ]

Gene ID: 108168557, updated on 8-Feb-2024

Summary

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Official Symbol
Gm21627provided by MGI
Official Full Name
predicted gene, 21627provided by MGI
Primary source
MGI:MGI:5434982
See related
Ensembl:ENSMUSG00000100856 AllianceGenome:MGI:5434982
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See Gm21627 in Genome Data Viewer
Location:
Y; Y C3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (63238379..63262981)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (63229851..63254453)

Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 21530 Neighboring gene predicted gene, 21617 Neighboring gene multifunctional methyltransferase subunit TRM112-like protein pseudogene Neighboring gene predicted gene, 21634

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
X-linked lymphocyte-regulated protein PM1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000087.8 Reference GRCm39 C57BL/6J

    Range
    63238379..63262981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017318758.1 → XP_017174247.1  X-linked lymphocyte-regulated protein PM1-like

    UniProtKB/TrEMBL
    A0A087WRK1, A0A087WS79
    Related
    ENSMUSP00000140851.2, ENSMUST00000187768.2
    Conserved Domains (1) summary
    pfam04803
    Location:112 → 215
    Cor1; Cor1/Xlr/Xmr conserved region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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