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Taf9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [ Mus musculus (house mouse) ]

Gene ID: 108143, updated on 28-May-2016
Official Symbol
Taf9provided by MGI
Official Full Name
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factorprovided by MGI
Primary source
MGI:MGI:1888697
See related
Ensembl:ENSMUSG00000052293 Ensembl:ENSMUSG00000078941
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Taf2g; TAFII31; TAFII32; AA673500; AU045423; 2310012M09Rik
Orthologs
Location:
13; 13 D1
Exon count:
4
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 13 NC_000079.6 (100651343..100656060)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (101421298..101436368)

Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene MARVEL (membrane-associating) domain containing 2 Neighboring gene RAD17 checkpoint clamp loader component Neighboring gene adenylate kinase 6 Neighboring gene coiled-coil domain containing 125 Neighboring gene cyclin-dependent kinase 7 Neighboring gene mitochondrial ribosomal protein S36

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC117979

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATPase binding ISO
Inferred from Sequence Orthology
more info
 
C2H2 zinc finger domain binding ISO
Inferred from Sequence Orthology
more info
 
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA binding ISO
Inferred from Sequence Orthology
more info
 
activating transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
contributes_to histone acetyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
p53 binding ISO
Inferred from Sequence Orthology
more info
 
transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
transcription regulatory region DNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
box C/D snoRNP assembly ISO
Inferred from Sequence Orthology
more info
 
histone H3 acetylation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of proteasomal ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cell growth ISO
Inferred from Sequence Orthology
more info
 
positive regulation of response to cytokine stimulus ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
protein stabilization ISO
Inferred from Sequence Orthology
more info
 
response to interleukin-1 ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
MLL1 complex ISO
Inferred from Sequence Orthology
more info
 
PCAF complex ISO
Inferred from Sequence Orthology
more info
 
STAGA complex ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
pre-snoRNP complex ISO
Inferred from Sequence Orthology
more info
 
transcription factor TFIID complex ISO
Inferred from Sequence Orthology
more info
PubMed 
transcription factor TFTC complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
transcription initiation factor TFIID subunit 9
Names
RNA polymerase II TBP-associated factor subunit G
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32 kDa
transcription initiation factor TFIID 31 kDa subunit
transcription initiation factor TFIID 32 kDa subunit
NP_001015889.1
NP_081415.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015889.2NP_001015889.1  transcription initiation factor TFIID subunit 9

    See identical proteins and their annotated locations for NP_001015889.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longer transcript. Variants 1 and 3 encode the same protein.
    Source sequence(s)
    BC096683, BQ839921, BY108476
    Consensus CDS
    CCDS26735.1
    UniProtKB/Swiss-Prot
    Q8VI33
    Related
    ENSMUSP00000132143, ENSMUST00000167256
    Conserved Domains (1) summary
    cd07979
    Location:13129
    TAF9; TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
  2. NM_027139.5NP_081415.1  transcription initiation factor TFIID subunit 9

    See identical proteins and their annotated locations for NP_081415.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 3. Variants 1 and 3 encode the same protein.
    Source sequence(s)
    BC096683, BY108476
    Consensus CDS
    CCDS26735.1
    UniProtKB/Swiss-Prot
    Q8VI33
    Related
    ENSMUSP00000081772, ENSMUST00000084721
    Conserved Domains (1) summary
    cd07979
    Location:13129
    TAF9; TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000079.6 Reference GRCm38.p3 C57BL/6J

    Range
    100651343..100656060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000035.1 Alternate Mm_Celera

    Range
    104261518..104265679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)