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    Slco3a1 solute carrier organic anion transporter family, member 3a1 [ Mus musculus (house mouse) ]

    Gene ID: 108116, updated on 26-Feb-2013
    Official Symbol
    Slco3a1provided by MGI
    Official Full Name
    solute carrier organic anion transporter family, member 3a1provided by MGI
    Primary source
    MGI:1351867
    See related
    Ensembl:ENSMUSG00000025790; Vega:OTTMUSG00000024304
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Anr1; MJAM; OATP-D; R75096; Slc21a11; 5830414C08Rik
    Location :
    7; 7 D1
    Sequence :
    Chromosome: 7; NC_000073.6 (74275418..74554780, complement)
    See Slco3a1 in Epigenomics, MapViewer

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 Neighboring gene predicted gene 6006 Neighboring gene predicted gene, 20115 Neighboring gene actin, gamma, cytoplasmic 1 pseudogene Neighboring gene YEATS domain containing 4 pseudogene

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750.
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068.
    3. Elucidation of the transcription network governing mammalian sex determination by exploiting strain-specific susceptibility to sex reversal. Munger SC, et al. Genes Dev, 2009 Nov 1. PMID 19884258.
    4. Molecular physiology of renal organic anion transporters. Sekine T, et al. Am J Physiol Renal Physiol, 2006 Feb. PMID 16403838.
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073.

    See all (16) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction

    Markers

    Genotypes

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    oligopeptide transporter activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    organic anion transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    ion transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    oligopeptide transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    organic anion transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    prostaglandin transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    basal plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    cell surface ISO
    Inferred from Sequence Orthology
    more info
    		  
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    integral to plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    Preferred Names
    solute carrier organic anion transporter family member 3A1
    Names
    solute carrier organic anion transporter family member 3A1
    androgen regulated protein 1
    solute carrier family 21 member 11
    organic anion-transporting polypeptide D
    sodium-independent organic anion transporter D
    solute carrier family 21 (organic anion transporter), member 11

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038643.1 → NP_001033732.1  solute carrier organic anion transporter family member 3A1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC114591, AK031280, AK037938
      Consensus CDS
      CCDS21366.1
      UniProtKB/Swiss-Prot
      Q8R3L5
      Related
      ENSMUSP00000095973, OTTMUSP00000028956, ENSMUST00000098371, OTTMUST00000059525
      Conserved Domains (3) summary
      cd01330
      Location:467 – 513
      Blast Score: 159
      KAZAL_SLC21; The kazal-type serine protease inhibitor domain has been detected in an extracellular loop region of solute carrier 21 (SLC21) family members (organic anion transporters) , which may regulate the specificity of anion uptake. The KAZAL_SLC21 domain is a ...
      cd06174
      Location:47 – 240
      Blast Score: 131
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam03137
      Location:39 – 623
      Blast Score: 1610
      OATP; Organic Anion Transporter Polypeptide (OATP) family

    2. NM_023908.2 → NP_076397.2  solute carrier organic anion transporter family member 3A1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK031280, AK046945, AK152488
      Consensus CDS
      CCDS21367.1
      UniProtKB/Swiss-Prot
      Q8R3L5
      Related
      ENSMUSP00000026897, OTTMUSP00000028955, ENSMUST00000026897, OTTMUST00000059524
      Conserved Domains (3) summary
      cd01330
      Location:467 – 513
      Blast Score: 161
      KAZAL_SLC21; The kazal-type serine protease inhibitor domain has been detected in an extracellular loop region of solute carrier 21 (SLC21) family members (organic anion transporters) , which may regulate the specificity of anion uptake. The KAZAL_SLC21 domain is a ...
      cd06174
      Location:47 – 240
      Blast Score: 129
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam03137
      Location:39 – 623
      Blast Score: 1613
      OATP; Organic Anion Transporter Polypeptide (OATP) family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 103

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p1 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p1 C57BL/6J

      Range
      74275418..74554780, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000029.1 Alternate Mm_Celera

      Range
      71722299..72002017, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    genomic AAHY01063100.1 None
    genomic AAHY01063101.1 None
    genomic AAHY01063102.1 None
    genomic AAHY01063103.1 None
    genomic AAHY01063104.1 None
    genomic AAHY01063105.1 None
    genomic AAHY01063106.1 None
    genomic AAHY01063107.1 None
    genomic AAHY01063108.1 None
    genomic AAHY01063109.1 None
    genomic AAHY01063110.1 None
    genomic AAHY01063111.1 None
    genomic AAHY01063112.1 None
    genomic AAHY01063113.1 None
    genomic AAHY01063114.1 None
    genomic AAHY01063115.1 None
    genomic AAHY01063116.1 None
    genomic AAHY01063117.1 None
    genomic AC114591.15 None
    genomic AC116472.14 (131076..181027) None
    genomic AC124629.11 (63848..195322) None
    genomic CH466543.2 EDL07119.1 mixed
      EDL07120.1 mixed
      EDL07121.1 mixed
    mRNA AF226324.1 AAF35370.1 C57BL/6
    mRNA AK020010.1 BAB31965.1 C57BL/6J
    mRNA AK031280.1 None C57BL/6J
    mRNA AK037938.1 BAC29904.1 C57BL/6J
    mRNA AK046945.1 None C57BL/6J
    mRNA AK087071.1 BAC39796.1 C57BL/6J
    mRNA AK151781.1 None C57BL/6J
    mRNA AK152488.1 BAE31259.1 C57BL/6J
    mRNA AK166266.1 BAE38670.1
    mRNA BC025059.1 AAH25059.1 FVB/N
    mRNA BC094464.1 AAH94464.1 FVB/N
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8R3L5.1 GenPept UniProtKB/Swiss-Prot:Q8R3L5

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous

      Supplemental Content

      Table of contents

      Related information

      • Order cDNA clone
        Order cDNA clone
      • BioProjects
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      • BioSystems
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      • CCDS
        Links from Gene to CCDS are established if a gene encodes a protein sequence that is a member of a Consensus CDS (CCDS).
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • dbVar
        Link from Gene to dbVar
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • GEO Profiles
        Related GEO
      • HomoloGene
        Links between HomoloGene and Gene are provided by the HomoloGene group when a gene is included in a HomoloGene record.
      • Map Viewer
        These links are maintained by the Map Viewer group and are provided when a GeneID is annotated on a map for the same species.
      • Nucleotide
        Link to related Nucleotide entry
      • Probe
        Related Probe entry
      • Protein
        Link to related protein entry
      • PubChem Compound
        PubChem Compounds
      • PubChem Substance
        PubChem Substances
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • RefSeq RNAs
        Link to Nucleotide RefSeq RNAs
      • SNP
        Related SNP records
      • SNP: GeneView
        SNPs linked from GeneView
      • SNP: Genotype
        Gene Genotype Report
      • Taxonomy
        Link to related taxonomy entry
      • UniGene
        Links are provided between Gene and UniGene when both databases calculate links to the same mRNA record (gi).
      • UniSTS
        Related UniSTS records

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