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B3gnt5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [ Mus musculus (house mouse) ]

Gene ID: 108105, updated on 28-May-2016
Official Symbol
B3gnt5provided by MGI
Official Full Name
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5provided by MGI
Primary source
MGI:MGI:2137302
See related
Ensembl:ENSMUSG00000022686 Vega:OTTMUSG00000026282
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
beta3GnT5
Orthologs
Location:
16; 16 B1
Exon count:
7
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 16 NC_000082.6 (19760192..19772758)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (19760327..19772846)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene lysosomal-associated membrane protein 3 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene RIKEN cDNA A930003A15 gene Neighboring gene kelch-like 6

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
central nervous system development ISO
Inferred from Sequence Orthology
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
protein glycosylation IEA
Inferred from Electronic Annotation
more info
 
sphingolipid biosynthetic process TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intracellular ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase
Names
BGnT-5
UDP-GlcNAc:beta-Gal beta-1,3-N-acetylglucosaminyltransferase 5
beta-1,3-Gn-T5
beta-1,3-N-acetylglucosaminyltransferase 5
beta3Gn-T5
lactotriaosylceramide synthase
lc(3)Cer synthase
lc3 synthase
NP_001152879.1
NP_001152880.1
NP_473393.2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159407.1NP_001152879.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

    See identical proteins and their annotated locations for NP_001152879.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
    Source sequence(s)
    AK037166, AK048010, AK083839, BB667148, BC063076, CN533455
    Consensus CDS
    CCDS28040.1
    UniProtKB/Swiss-Prot
    Q8BGY6
    Related
    ENSMUSP00000126157, ENSMUST00000164397
    Conserved Domains (1) summary
    cl21608
    Location:101297
    Galactosyl_T; Galactosyltransferase
  2. NM_001159408.1NP_001152880.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

    See identical proteins and their annotated locations for NP_001152880.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AK037166, AK048010, BB667148, BC063076
    Consensus CDS
    CCDS28040.1
    UniProtKB/Swiss-Prot
    Q8BGY6
    Related
    ENSMUSP00000112624, OTTMUSP00000032338, ENSMUST00000121344, OTTMUST00000064999
    Conserved Domains (1) summary
    cl21608
    Location:101297
    Galactosyl_T; Galactosyltransferase
  3. NM_054052.3NP_473393.2  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

    See identical proteins and their annotated locations for NP_473393.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AK083839, BB667148, BC063076
    Consensus CDS
    CCDS28040.1
    UniProtKB/Swiss-Prot
    Q8BGY6
    Related
    ENSMUSP00000078712, OTTMUSP00000032337, ENSMUST00000079780, OTTMUST00000064998
    Conserved Domains (1) summary
    cl21608
    Location:101297
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p3 C57BL/6J

    Range
    19760192..19772758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011245803.1XP_011244105.1  

    See identical proteins and their annotated locations for XP_011244105.1

    UniProtKB/Swiss-Prot
    Q8BGY6
    Conserved Domains (1) summary
    cl21608
    Location:101297
    Galactosyl_T; Galactosyltransferase
  2. XM_006521706.2XP_006521769.1  

    See identical proteins and their annotated locations for XP_006521769.1

    UniProtKB/Swiss-Prot
    Q8BGY6
    Related
    ENSMUSP00000113145, OTTMUSP00000032339, ENSMUST00000119468, OTTMUST00000065001
    Conserved Domains (1) summary
    cl21608
    Location:101297
    Galactosyl_T; Galactosyltransferase

Alternate Mm_Celera

Genomic

  1. AC_000038.1 Alternate Mm_Celera

    Range
    20328624..20341086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)