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SYNE3 spectrin repeat containing nuclear envelope family member 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 107968244, updated on 3-Apr-2024

Summary

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Official Symbol
SYNE3provided by VGNC
Official Full Name
spectrin repeat containing nuclear envelope family member 3provided by VGNC
Primary source
VGNC:VGNC:57266
Locus tag
CK820_G0025057
See related
Ensembl:ENSPTRG00000006691
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SYNE3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 15 NC_072413.2 (93405575..93515332, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 14 NC_072412.1 (86697031..86799364, complement)

Chromosome 15 - NC_072413.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107968243 Neighboring gene uncharacterized LOC134808410 Neighboring gene putative uncharacterized protein encoded by LINC00341 Neighboring gene uncharacterized LOC100613492 Neighboring gene uncharacterized LOC134808317 Neighboring gene small Cajal body-specific RNA 13 Neighboring gene glutaredoxin 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of meiotic nuclear membrane microtubule tethering complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nesprin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072413.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    93405575..93515332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054666277.2 → XP_054522252.1  nesprin-3 isoform X4

    UniProtKB/TrEMBL
    A0A2J8QMD4, A0A6D2WNZ7, H2Q8V7, K7DLC8

  2. XM_016926694.4 → XP_016782183.1  nesprin-3 isoform X3

    UniProtKB/TrEMBL
    A0A2J8QMD5, A0A6D2WCZ7, K7BEN9, K7DPQ3
    Related
    ENSPTRP00000073950.1
    Conserved Domains (3) summary
    pfam10541
    Location:920 → 975
    KASH; Nuclear envelope localization domain
    cl02488
    Location:562 → 739
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl25732
    Location:141 → 760
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_016926695.4 → XP_016782184.1  nesprin-3 isoform X3

    UniProtKB/TrEMBL
    A0A2J8QMD5, A0A6D2WCZ7, K7BEN9, K7DPQ3
    Conserved Domains (3) summary
    pfam10541
    Location:920 → 975
    KASH; Nuclear envelope localization domain
    cl02488
    Location:562 → 739
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl25732
    Location:141 → 760
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_016926693.4 → XP_016782182.3  nesprin-3 isoform X2

  5. XM_016926692.4 → XP_016782181.3  nesprin-3 isoform X1

RNA

  1. XR_010151022.1 RNA Sequence

  2. XR_010151023.1 RNA Sequence

  3. XR_001709312.4 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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