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upf3b UPF3B regulator of nonsense mediated mRNA decay [ Sinocyclocheilus grahami ]

Gene ID: 107550761, updated on 14-Mar-2024

Summary

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Gene symbol
upf3b
Gene description
UPF3B regulator of nonsense mediated mRNA decay
See related
Ensembl:ENSSGRG00000054177
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus grahami
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current SAMN03320097.WGS_v1.1 (GCF_001515645.1) Unplaced Scaffold NW_015505586.1 (340862..346099)

NW_015505586.1Genomic Context describing neighboring genes Neighboring gene NF-kappa-B-activating protein-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1-like Neighboring gene ribosomal protein L39 Neighboring gene sosondowah ankyrin repeat domain family d

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015505586.1 Unplaced Scaffold Reference SAMN03320097.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 3B
Names
UPF3 regulator of nonsense transcripts homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus grahami Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320097.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015505586.1 Reference SAMN03320097.WGS_v1.1 Primary Assembly

    Range
    340862..346099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016232131.1 → XP_016087617.1  regulator of nonsense transcripts 3B

    UniProtKB/TrEMBL
    A0A672T5L5, A0A672T940
    Related
    ENSSGRP00000110092.1, ENSSGRT00000116959.1
Nucleotide Protein
Heading Accession and Version

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