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LIG1 DNA ligase 1 [ Miniopterus natalensis ]

Gene ID: 107540056, updated on 30-Mar-2024

Summary

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Gene symbol
LIG1
Gene description
DNA ligase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Miniopterus natalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Miniopteridae; Miniopterus
Orthologs
human mouse all
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Genomic context

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See LIG1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current Mnat.v1 (GCF_001595765.1) Unplaced Scaffold NW_015504645.1 (729544..756782, complement)

NW_015504645.1Genomic Context describing neighboring genes Neighboring gene epididymal sperm binding protein 1 Neighboring gene calcium binding protein 5 Neighboring gene zinc finger SWIM-type containing 9 Neighboring gene zinc finger protein 114

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015504645.1 Unplaced Scaffold Reference Mnat.v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Okazaki fragment processing involved in mitotic DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Miniopterus natalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnat.v1

Genomic

  1. NW_015504645.1 Reference Mnat.v1

    Range
    729544..756782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016216734.1 → XP_016072220.1  DNA ligase 1 isoform X1

    Conserved Domains (5) summary
    cd07969
    Location:752 → 897
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:529 → 747
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:127 → 912
    PLN03113; DNA ligase 1; Provisional
    cd11741
    Location:113 → 205
    TIN2_TBM; TRF-binding motif region of TRF-Interacting Nuclear factor 2
    pfam04675
    Location:286 → 457
    DNA_ligase_A_N; DNA ligase N terminus

  2. XM_016216733.1 → XP_016072219.1  DNA ligase 1 isoform X1

    Conserved Domains (5) summary
    cd07969
    Location:752 → 897
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:529 → 747
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:127 → 912
    PLN03113; DNA ligase 1; Provisional
    cd11741
    Location:113 → 205
    TIN2_TBM; TRF-binding motif region of TRF-Interacting Nuclear factor 2
    pfam04675
    Location:286 → 457
    DNA_ligase_A_N; DNA ligase N terminus

  3. XM_016216735.1 → XP_016072221.1  DNA ligase 1 isoform X2

    Conserved Domains (5) summary
    cd07969
    Location:745 → 890
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:522 → 740
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:120 → 905
    PLN03113; DNA ligase 1; Provisional
    cd11741
    Location:106 → 198
    TIN2_TBM; TRF-binding motif region of TRF-Interacting Nuclear factor 2
    pfam04675
    Location:279 → 450
    DNA_ligase_A_N; DNA ligase N terminus

  4. XM_016216736.1 → XP_016072222.1  DNA ligase 1 isoform X3

    Conserved Domains (4) summary
    cd07969
    Location:716 → 861
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:493 → 711
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:122 → 876
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:250 → 421
    DNA_ligase_A_N; DNA ligase N terminus
Nucleotide Protein
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